2024-10-09
: 18468 3D structures containing nucleic acids | RNAEQ
v3.356all
DNA
RNA
DNA+RNA
Hybrid
PNA
Protein
+
-
Ligand
≥0.2 kDa
≥1 kDa
X-ray
EM
NMR
Resolution Limits (Å)
NA Feature
antiparallel double helix
A-form double helix
B-form double helix
Z-form double helix
parallel helix
I-motif
triple helix
quadruplex
quadruplex, ONQUADRO-annotated
G-quadruplex, G4DSSR-annotated
racemic structure
only standard nucleotides (A,G,C,T,U,I)
DNA mispair
NDB Music Atlas-annotated
…
DNATCO Confal Analysis
RNA Equiv Class (RNAEQ)-annotated
RNACentral-annotated
RNACentral R2DT diagrams
Rfam-annotated
…
Aptamer
Holliday junction
Ribosomal RNA
Riboswitch
Ribozyme or DNAzyme
Transfer RNA
Telomere
…
Unannotated (NA, no protein)
Protein Feature
…Enzyme…
Polymerase
Nuclease
Helicase
Recombinase
Isomerase
Lyase
Ligase/Synthetase
…Regulatory…
CRISPR
Splicing
Gene Silencing
Transcription
Translation
Post-transcriptional
Replication/Repair
…Structural…
Antibody
Nucleosome
Ribosome
Spliceosome
Telomere
Virus
……
DNAproDB analysis
3DFootPrint analysis
……
Unannotated (prot)
Ligand Feature
polymer-like/antibiotic
intercalation
bis-intercalation
minor groove binder
major groove binder
covalently linked
metal coordinating (Pt,Rh,Ru)
……
Unannotated (ligand)
#NA chains
any
1
2
3
4
≥5
Additional Filters
NA sequence
# NT residues
any NA chain in entry
all NA chains in entry
Date Range
Released
Deposited
Published
Last Update
Deposited MW (kDa)
Published
Experimental Data
Representative RNA Set
Founding/non-PDB Structures
Batch Ids
Crystal Space Group
inversion/mirror/glide symmetry
Primitive lattice (P*)
C-face centered lattice (C*)
All-face centered lattice (F*)
Body-centered lattice (I*)
Hexagonally-centered lattice (H*)
Rhombohedrally-centered lattice (R*)
C 1 2 1
C 1 2/c 1
C 2 2 2
C 2 2 21
F 2 2 2
F 2 3
F 4 3 2
H -3
H 3
H 3 2
I 1 2 1
I 2 2 2
I 2 3
I 21 21 21
I 21 3
I 4
I 4 2 2
I 4 3 2
I 41
I 41 2 2
I 41 3 2
P -1
P 1
P 1 1 21
P 1 2 1
P 1 21 1
P 1 21/c 1
P 1 21/n 1
P 2 2 21
P 2 21 21
P 2 3
P 21 2 21
P 21 21 2
P 21 21 21
P 21 3
P 3
P 3 1 2
P 3 2 1
P 31
P 31 1 2
P 31 2 1
P 32
P 32 1 2
P 32 2 1
P 4 3
P 4 2 2
P 4 21 2
P 41
P 41 2 2
P 41 21 2
P 41 3 2
P 42
P 42 2 2
P 42 21 2
P 42 3 2
P 43
P 43 2 2
P 43 21 2
P 43 3 2
P 6
P 6 2 2
P 61
P 61 2 2
P 62
P 62 2 2
P 63
P 63 2 2
P 64
P 64 2 2
P 65
P 65 2 2
P b c a
P n n a
R 3 2
Cell Lengths (Å)
Cell Angles (°)
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NAKB ID
Release Date ↑
Release Date ↓
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Resolution (Xray/EM) ↑
Resolution (Xray/EM) ↓
Deposited MW ↑
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DNATCO score ↑
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