2025-01-01 : 18787 3D structures containing nucleic acids | RNAEQ v3.368all
NAKB entry image
Released2008-09-02Deposited: 2008-04-22
TitleCrystal Structure of an AlkA Host/Guest Complex 2'-fluoro-2'-deoxy-1,N6-ethenoadenine:Thymine Base Pair
AuthorsBowman BR, Lee S, Wang S, Verdine GL
MethodX-RAY DIFFRACTION2.8 Å Rwork: 0.213 Rfree: 0.273
P 1 21 1a=74.938 Å b=100.742 Å c=102.978 Å α=90° β=93.86° γ=90°
Software: CNS, DENZO, PDB_EXTRACT, SCALEPACK
Primary CitationStructure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA. Bowman BR, Lee S, Wang S, Verdine GL Structure (2008)
Entry ContentDeposited MW: 140.43 kDa
Analysis
Protein Annotations
Nonstandard Nucleotides
TypeDescription (hover for sequence)Chains(Auth)SourceMW(kDa)Links
DNAGACATGANTGCC (12-MER)E,G3.7
GGCATTCATGTC (12-MER)F,H3.7
ProteinDNA-3-methyladenine glycosylase 2A,B,C,DEscherichia coli31.4
Assembly #Type, Components (Author Chain Ids)Oligomer | Point SymmetryActions
1author and software defined
DNA: GACATGANTGCC (12-MER) (E,G)
DNA: GGCATTCATGTC (12-MER) (F,H)
Protein: DNA-3-methyladenine glycosylase 2 (A,B,C,D)
octameric(8) | D2View Assembly in 3D (Mol*)
View Nucleic Acid Parameters (DSSR)
Download Assembly mmCIF File (RCSB)