2025-01-15 : 18849 3D structures containing nucleic acids | RNAEQ v3.370all
NAKB entry image
Released2015-09-23Deposited: 2014-11-27
TitleCrystal structure of the nucleosome core particle
AuthorsSivaraman P, Kumarevel TS
MethodX-RAY DIFFRACTION2.805 Å Rwork: 0.2214 Rfree: 0.27
P 21 21 21a=105.381 Å b=109.363 Å c=175.572 Å α=90° β=90° γ=90°
Software: HKL-2000, PDB_EXTRACT, PHASER, PHENIX
Primary CitationStructural and functional analyses of nucleosome complexes with mouse histone variants TH2a and TH2b, involved in reprogramming Padavattan S, Shinagawa T, Hasegawa K, Kumasaka T, Ishii S, Kumarevel T Biochem Biophys Res Commun (2015)
Entry ContentDeposited MW: 199.42 kDa
Analysis
NA Annotations
Protein Annotations
TypeDescription (hover for sequence)Chains(Auth)SourceMW(kDa)Links
DNADNA (146-MER)I,Jsynthetic construct45.1
ProteinHistone H3.1A,EHomo sapiens15.3
Histone H4B,FHomo sapiens11.3
Histone H2A type 1-B/EC,GHomo sapiens14
Histone H2B type 1-BD,HHomo sapiens13.9
LigandMANGANESE (II) ION0.055
CHLORIDE ION0.035
Assembly #Type, Components (Author Chain Ids)Oligomer | Point SymmetryActions
1author and software defined
DNA: DNA (146-MER) (I,J)
Protein: Histone H2A type 1-B/E (C,G)
Protein: Histone H2B type 1-B (D,H)
Protein: Histone H3.1 (A,E)
Protein: Histone H4 (B,F)
decameric(10) | C2View Assembly in 3D (Mol*)
View Nucleic Acid Parameters (DSSR)
Download Assembly mmCIF File (RCSB)